Bioinformatician at Istituto Europeo di Oncologia

Biotechnologist living around computers. Interested in data analysis to support experimental research as well as in pure computational experiments and in software/pipeline development.

References available upon request.

Bioinformatician

Istituto Europeo di Oncologia

Milan, Italy

07/2019 - Present

Pasini’s lab
Analysis of omics data analysis (RNA-seq, ChIP-seq, ATAC-seq) | Comparison of different ATAC-seq peak callers. | Development of an ATAC-seq pipeline for Snakemake.

Research Assistant

Instituto de Biomedicina de Sevilla

Seville, Spain

07/2018 - 10/2018

Gene expression lab
Analysis of MNase-seq data from Ccr4-mutant yeast.

Master’s thesis student

Instituto de Biomedicina de Sevilla

Seville, Spain

09/2017 - 07/2018

Gene expression lab.
Analysis of MNase-seq data from Xrn1-mutant yeast | MNase-qPCR experiments, including MNase DNA digestion, primer desing, qPCRs and analysis.

• Supervisors: Dr. Sebastián Chávez de Diego and Dr. Gabriel Gutierrez Pozo.
• MSc degree in Molecular Genetics and Biotechnology.

Research internship student

Institut d’Investigació Biomèdica de Girona

Girona, Spain

07/2017 - 09/2017

Unit of Diabetes, Endocrinology and Nutrition
Identification of new factors (genetic and bacterial) related to adipose tissue physiology and obesity.

Bachelor’s thesis student

Microbial. Sistemes i aplicacions analítiques, S.L.

Girona, Spain

01/2017 - 06/2017

DNA extraction of intestinal mucosa biopsies | qPCR experiments to detect clusters and families of bacteria | NGS data analysis to quantify bacterial genders in intestinal biopsies.

• Supervisor: Prof. Jesús García-Gil.
• BSc degree in Biotecnology.

Internship student

Microbial. Sistemes i aplicacions analítiques, S.L.

Girona, Spain

09/2016 - 06/2017

Microbiological and molecular analyses of food and water samples to search for pathogens and perform food forensics.

MSc in Bioinformatics and Biostatistics

Universitat Oberta de Catalunya

Online

2018 - Present

MSc in Molecular Genetics and Biotechnology

Universidad de Sevilla

Seville, Spain

2017 - 2018

• Specialization on Molecular Biology R&D
  
• Master’s thesis: Influence of Xrn1 in nucleosome positioning across Saccharomyces cerevisiae genome and its effects in transcription.

BSc in Biotechnology

Universitat de Girona

Girona, Spain

2012 - 2017

• Specialization in Cellular & Molecular Biotechnology.
  
• Bachelor’s thesis: Butyrate-induced changes in the diversity of intestinal mucosa-associated microbiota in colorectal cancer patients submitted to a lateral ileostomy.

Full list of publications in my ORCID profile

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Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

Begley V et al. RNA Biology. DOI: 10.1080/15476286.2020.1845504.

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2020